001 /*
002 * CRIMSON
003 * Copyright (c) 2006, Stephen Fisher, Susan Davidson, and Junhyong Kim,
004 * University of Pennsylvania.
005 *
006 * This program is free software; you can redistribute it and/or
007 * modify it under the terms of the GNU General Public License as
008 * published by the Free Software Foundation; either version 2 of the
009 * License, or (at your option) any later version.
010 *
011 * This program is distributed in the hope that it will be useful, but
012 * WITHOUT ANY WARRANTY; without even the implied warranty of
013 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
014 * General Public License for more details.
015 *
016 * You should have received a copy of the GNU General Public License
017 * along with this program; if not, write to the Free Software
018 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
019 * 02110-1301 USA.
020 *
021 * @(#)QueryDialog.java
022 */
023
024 package edu.upenn.crimson.gui;
025
026 import edu.upenn.crimson.*;
027 import java.awt.*;
028 import java.awt.event.*;
029 import javax.swing.*;
030 import java.io.File;
031 import javax.swing.border.Border;
032
033 /**
034 * This will query the specified query, using a dialog box to get the
035 * filename, repeat, and incSequence info.
036 *
037 * @author Stephen Fisher
038 * @version $Id: QueryDialog.java,v 1.10 2009/07/21 01:19:12 fisher Exp $
039 */
040 public class QueryDialog extends JDialog {
041 QueryDialog thisDialog;
042
043 private Query query;
044
045 private JTextField fileNameTF = new JTextField(10);
046 private JButton fileBrowseB;
047 private JCheckBox fileIntSeqCB = new JCheckBox("Include Internal Sequence");
048 // start = 1, min = 1, max = 100, step = 1
049 private JSpinner fileRepeatS = new JSpinner(new SpinnerNumberModel(1, 1, 100, 1));
050
051 private JButton runB;
052 private JButton cancelB;
053
054 public QueryDialog(String queryID) {
055 this(queryID, "", false, 1);
056 }
057
058 public QueryDialog(String queryID, String file, boolean incSequence, int repeat) {
059 super((Frame) null, "Run Query", true);
060
061 // keep pointer to self so can 'dispose' Dialog below
062 thisDialog = this;
063
064 query = ObjectHandles.getQuery(queryID);
065 if (query == null) {
066 CrimsonUtils.printMsg("Unable to access query: " + queryID, CrimsonUtils.ERROR);
067 return;
068 }
069
070 // *************************************************
071 // SETUP DEFAULTS
072 fileNameTF.setText(file);
073
074 fileIntSeqCB.setSelected(incSequence);
075
076 // if including all leaves and base pairs then disable option
077 // for repeated runs
078 if ((query.getLeafSelection() == 0) && (query.getSequenceSelection() == 0)) {
079 fileRepeatS.setEnabled(false);
080 } else {
081 fileRepeatS.setValue(new Integer(repeat));
082 }
083 // END SETUP DEFAULTS
084 // *************************************************
085
086 setDefaultCloseOperation(DISPOSE_ON_CLOSE);
087 addWindowListener(new WindowAdapter() {
088 public void windowClosing(WindowEvent e) {
089 thisDialog.dispose();
090 }
091 });
092
093 // *************************************************
094 // FILE INFO SETUP
095 JPanel fileInfoP = new JPanel(new BorderLayout());
096 fileInfoP.setBorder(BorderFactory.createEmptyBorder(5,5,5,5));
097
098 // file browse button
099 fileBrowseB = new JButton("Browse...");
100 fileBrowseB.addActionListener(new ActionListener() {
101 public void actionPerformed(ActionEvent e) {
102 String name = fileNameTF.getText();
103
104 if (CrimsonUtils.isEmpty(name)) {
105 // no current name so use queryID and
106 // treeID to create a default name
107 if (query != null) {
108 name = query.getID();
109 if (! CrimsonUtils.isEmpty(query.getTreeID())) {
110 name += "_" + query.getTreeID();
111 }
112 }
113 }
114 File file = GUIUtils.saveFileChooser("Select Output NEXUS File", name, null);
115 fileNameTF.setText(GUIUtils.getFilename(file));
116 }
117 });
118
119 // Output filename
120 JPanel fileP = new JPanel(new GridLayout(0,1,0,5));
121 Border etchedBorder = BorderFactory.createEtchedBorder();
122 Border loweredBorder = BorderFactory.createLoweredBevelBorder();
123 fileP.setBorder(BorderFactory.createTitledBorder(etchedBorder, "Output File"));
124 fileNameTF.setBorder(loweredBorder);
125 fileP.add(fileNameTF);
126 fileP.add(fileBrowseB);
127 fileInfoP.add(fileP, BorderLayout.NORTH);
128
129 // Number of Repeats
130 JPanel fileRepeatP = new JPanel(new GridLayout(0,1,0,5));
131 fileRepeatP.setBorder(BorderFactory.createTitledBorder(etchedBorder, "Number of Query Runs"));
132 fileRepeatS.setBorder(loweredBorder);
133 fileRepeatP.add(fileRepeatS);
134
135 JPanel fileCtrlP = new JPanel(new GridLayout(0,1,0,5));
136 fileCtrlP.add(fileIntSeqCB);
137 fileCtrlP.add(fileRepeatP);
138 fileInfoP.add(fileCtrlP, BorderLayout.SOUTH);
139 // END FILE INFO SETUP
140 // *************************************************
141
142 // select button sub-panel
143 JPanel buttonP = new JPanel(new GridLayout(1,0,5,5));
144 buttonP.setBorder(BorderFactory.createEmptyBorder(0, 20, 20, 20));
145 // select objects "save" Button
146 runB = new JButton("Run");
147 runB.setEnabled(true);
148 runB.addActionListener(new ActionListener() {
149 public void actionPerformed(ActionEvent e) {
150 int repeats = fileRepeatS.isEnabled() ? ((Integer) fileRepeatS.getValue()).intValue() : 1;
151 QueryUtils.runQuery(query.getID(), fileNameTF.getText(), fileIntSeqCB.isSelected(), repeats);
152 /*
153 String cmd = "runQuery(\"" + query.getID() + "\", \"";
154 cmd += fileNameTF.getText() + "\", ";
155 cmd += (fileIntSeqCB.isSelected()) ? "1, " : "0, ";
156 cmd += ((Integer) fileRepeatS.getValue()).toString() + ")";
157 Root.runCommand(cmd);
158 */
159 thisDialog.dispose();
160 }
161 });
162 buttonP.add(runB);
163 // select objects "cancel" Button
164 cancelB = new JButton("Cancel");
165 cancelB.setEnabled(true);
166 cancelB.addActionListener(new ActionListener() {
167 public void actionPerformed(ActionEvent e) {
168 thisDialog.dispose();
169 }
170 });
171 buttonP.add(cancelB);
172
173 getContentPane().setLayout(new BorderLayout());
174 getContentPane().add(fileInfoP, BorderLayout.NORTH);
175 getContentPane().add(buttonP, BorderLayout.SOUTH);
176 pack();
177
178 // set the default window size
179 setSize(getSize().width + 100, getSize().height + 30);
180
181 // display the window
182 setVisible(true);
183 }
184 } // QueryDialog.java