RNA-seq datasets generated by national workshop participants are provided below for public use. The national workshop handbook, containing the curriculum and protocols followed, is also available for download.
2015 National Single Cell Transcriptomics Workshop
- Sequencer: Illumina HiSeq 2500
- Sequencing Type: RNAseq
- Read length (nt): 100x100
- Paired End?: Yes
- Aligner: STAR
- Genomes: rn6 (rat) or mm10 (mouse)
- Gene Counts: HTSeq
Funding
- Penn Program in Single Cell Biology (PPSCB)
- Institute for Translational Medicine and Therapeutics (ITMAT)
- National Human Genome Research Institute (NHGRI)
