Uses of Interface
edu.upenn.gloDB.io.FASTAParser

Packages that use FASTAParser
edu.upenn.gloDB.io   
 

Uses of FASTAParser in edu.upenn.gloDB.io
 

Classes in edu.upenn.gloDB.io that implement FASTAParser
 class FASTAParserDefault
          The default parser for FASTA headers.
 class FASTAParserFly
          Parses the header line at the beginning of each sequence.
 class FASTAParserMinimal
          Parses the header line at the beginning of each FASTA sequence.
 

Methods in edu.upenn.gloDB.io with parameters of type FASTAParser
 Sequence SequenceFile.load(java.lang.String filename, java.lang.String id, FASTAParser parser)
          Load the first Sequence in the data file and return the resulting Sequence object.
 Sequence FASTASequence.load(java.lang.String filename, java.lang.String id, FASTAParser parser)
          Load the first sequence in the FASTA file and return the resulting Sequence object.
 java.util.HashSet SequenceFile.loadAll(java.lang.String filename, FASTAParser parser)
          Load all Sequences in the data file and return a HashSet containing the resulting Sequence objects.
 java.util.HashSet FASTASequence.loadAll(java.lang.String filename, FASTAParser parser)
          Load all Sequences in the FASTA file and return a set containing the resulting Sequence objects.
 




Copyright 2012 Stephen Fisher and Junhyong Kim, University of Pennsylvania. All Rights Reserved.