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Packages that use FASTAParser | |
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edu.upenn.gloDB.io |
Uses of FASTAParser in edu.upenn.gloDB.io |
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Classes in edu.upenn.gloDB.io that implement FASTAParser | |
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class |
FASTAParserDefault
The default parser for FASTA headers. |
class |
FASTAParserFly
Parses the header line at the beginning of each sequence. |
class |
FASTAParserMinimal
Parses the header line at the beginning of each FASTA sequence. |
Methods in edu.upenn.gloDB.io with parameters of type FASTAParser | |
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Sequence |
SequenceFile.load(java.lang.String filename,
java.lang.String id,
FASTAParser parser)
Load the first Sequence in the data file and return the resulting Sequence object. |
Sequence |
FASTASequence.load(java.lang.String filename,
java.lang.String id,
FASTAParser parser)
Load the first sequence in the FASTA file and return the resulting Sequence object. |
java.util.HashSet |
SequenceFile.loadAll(java.lang.String filename,
FASTAParser parser)
Load all Sequences in the data file and return a HashSet containing the resulting Sequence objects. |
java.util.HashSet |
FASTASequence.loadAll(java.lang.String filename,
FASTAParser parser)
Load all Sequences in the FASTA file and return a set containing the resulting Sequence objects. |
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