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java.lang.Objectedu.upenn.gloDB.io.FASTAParserMinimal
public class FASTAParserMinimal
Parses the header line at the beginning of each FASTA sequence. The header line is chopped into substrings at each space (" "). If a substring contains a ":" then it is assumed to be a key:value pair and is added to the attributes field as such. Otherwise, it is added as a value to the 'descriptors' key. This is very similar to FASTAParserFly.java, however it doesn't processes the gene_boundaries in any special way. Thus this should not be used for FASTA files that contain Features.
Constructor Summary | |
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FASTAParserMinimal()
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Method Summary | |
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java.util.HashMap |
parseHeader(java.lang.String header)
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public FASTAParserMinimal()
Method Detail |
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public java.util.HashMap parseHeader(java.lang.String header)
parseHeader
in interface FASTAParser
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