Serialized Form
source
java.lang.String source
- The contig that underlies the positions.
attributes
java.lang.String attributes
- This is similar to "qualifiers" in GenBank. ex: scores, strand
(+/-), phase (within codon). Each key/value pair is delimited
by a ";". the keys and values are separated by "=". ex:
"scores=.; strand=+". Key based attribute searches are case
sensitive.
- Notes:
- Should any of these be hardcoded as fields?
start
int start
- The initial position defining this Feature.
stop
int stop
- The last position defining this Feature.
start
int start
- The initial position defining this Feature.
startExt
int startExt
- The number of the positions defining the start position.
stop
int stop
- The last position defining this Feature.
stopExt
int stopExt
- The number of the positions defining the stop position.
Package edu.upenn.gloDB.gui |
thisDialog
FieldEditDialog thisDialog
save
java.util.ArrayList<E> save
textFields
java.util.ArrayList<E> textFields
okB
javax.swing.JButton okB
cancelB
javax.swing.JButton cancelB
thisDialog
ObjectSelectorDialog thisDialog
output
java.util.ArrayList<E> output
objectL
javax.swing.JList objectL
selectB
javax.swing.JButton selectB
cancelB
javax.swing.JButton cancelB
OPERATORS
java.lang.String[] OPERATORS
queryTF
javax.swing.JTextField queryTF
table
javax.swing.JTable table
tableModel
QueryBuilder.ListTableModel tableModel
trackID
java.lang.String trackID
updateB
javax.swing.JButton updateB
groupB
javax.swing.JButton groupB
ungroupB
javax.swing.JButton ungroupB
deleteB
javax.swing.JButton deleteB
deleteAllB
javax.swing.JButton deleteAllB
copyB
javax.swing.JButton copyB
computeB
javax.swing.JButton computeB
newB
javax.swing.JButton newB
operatorL
javax.swing.JList operatorL
negateChB
javax.swing.JCheckBox negateChB
trackL
javax.swing.JList trackL
sequenceChB
javax.swing.JCheckBox sequenceChB
sequenceCB
javax.swing.JComboBox sequenceCB
minWidthTF
javax.swing.JTextField minWidthTF
maxWidthTF
javax.swing.JTextField maxWidthTF
minSeqPosTF
javax.swing.JTextField minSeqPosTF
maxSeqPosTF
javax.swing.JTextField maxSeqPosTF
minRepeatTF
javax.swing.JTextField minRepeatTF
maxRepeatTF
javax.swing.JTextField maxRepeatTF
minWithinTF
javax.swing.JTextField minWithinTF
maxWithinTF
javax.swing.JTextField maxWithinTF
minPosTF
javax.swing.JTextField minPosTF
maxPosTF
javax.swing.JTextField maxPosTF
thisFrame
QueryBuilder thisFrame
thisFrame
ViewHTML thisFrame
htmlText
ViewHTML.HTMLEditorPane htmlText
thisFrame
ViewParserDefs thisFrame
Package edu.upenn.gloDB.parser |
specialConstructor
boolean specialConstructor
- This variable determines which constructor was used to create
this object and thereby affects the semantics of the
"getMessage" method (see below).
currentToken
Token currentToken
- This is the last token that has been consumed successfully. If
this object has been created due to a parse error, the token
followng this token will (therefore) be the first error token.
expectedTokenSequences
int[][] expectedTokenSequences
- Each entry in this array is an array of integers. Each array
of integers represents a sequence of tokens (by their ordinal
values) that is expected at this point of the parse.
tokenImage
java.lang.String[] tokenImage
- This is a reference to the "tokenImage" array of the generated
parser within which the parse error occurred. This array is
defined in the generated ...Constants interface.
eol
java.lang.String eol
- The end of line string for this machine.
errorCode
int errorCode
- Indicates the reason why the exception is thrown. It will have
one of the above 4 values.
Copyright 2012 Stephen Fisher and Junhyong Kim, University of Pennsylvania. All Rights Reserved.