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edu.upenn.* |
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edu.upenn.gloDB.GloDBUtils | ||
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public static final int |
ERROR |
2 |
public static final int |
FEATURE |
3 |
public static final int |
FEEDBACK |
3 |
public static final int |
SEQUENCE |
2 |
public static final int |
TRACK |
1 |
public static final int |
WARNING |
1 |
edu.upenn.gloDB.gui.edu.upenn.gloDB.gui.TrackBrowser.BrowserFrame | ||
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private final long |
MAX_FEATURES |
40000L |
edu.upenn.gloDB.gui.ViewHTML | ||
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private static final int |
INPUTSTREAM |
3 |
private static final int |
TEXT |
2 |
private static final int |
URL |
1 |
edu.upenn.gloDB.io.FASTASequence | ||
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private final java.lang.String |
DESC |
"FASTA files (*.fa; *.fas; *.fasta)" |
private final int |
ID |
2 |
edu.upenn.gloDB.io.FASTATrack | ||
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private final java.lang.String |
DESC |
"FASTA files (*.fa; *.fas; *.fasta)" |
private final int |
ID |
2 |
edu.upenn.gloDB.io.FileIO | ||
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public static final int |
FASTA |
2 |
public static final int |
GENBANK |
4 |
public static final int |
GFF |
3 |
public static final int |
GLODB |
1 |
edu.upenn.gloDB.io.GenBankTrack | ||
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private final java.lang.String |
DESC |
"GenBank files (*.gb; *.genbank)" |
private final int |
ID |
4 |
edu.upenn.gloDB.io.GenomeBrowser | ||
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private static final java.lang.String |
SURL |
"http://www.genome.ucsc.edu/" |
edu.upenn.gloDB.io.GFFTrack | ||
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private final java.lang.String |
DESC |
"GFF files (*.gff)" |
private final int |
ID |
3 |
edu.upenn.gloDB.io.GloDBTrack | ||
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private final java.lang.String |
DESC |
"Glo-DB files (*.glo)" |
private final int |
ID |
1 |
edu.upenn.gloDB.parser.ParserConstants | ||
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public static final int |
allTRACKS |
42 |
public static final int |
AND |
25 |
public static final int |
ASSIGN |
44 |
public static final int |
bAND |
30 |
public static final int |
bMINUS |
32 |
public static final int |
bNOT |
33 |
public static final int |
bOR |
31 |
public static final int |
DEFAULT |
0 |
public static final int |
EOF |
0 |
public static final int |
EOL |
37 |
public static final int |
EQUALS |
8 |
public static final int |
FROM |
16 |
public static final int |
HOOK |
34 |
public static final int |
IGNORE |
23 |
public static final int |
INTEGER |
10 |
public static final int |
LENGTH |
15 |
public static final int |
lGROUP |
19 |
public static final int |
lLENGTH |
12 |
public static final int |
lLENGTH2 |
13 |
public static final int |
lREPEAT |
17 |
public static final int |
lSET |
21 |
public static final int |
MINUS |
28 |
public static final int |
nINTEGER |
11 |
public static final int |
OBJECT |
43 |
public static final int |
OR |
27 |
public static final int |
PLUS |
35 |
public static final int |
POS |
24 |
public static final int |
POSITIONS |
41 |
public static final int |
REPEATED |
40 |
public static final int |
rGROUP |
20 |
public static final int |
rLENGTH |
14 |
public static final int |
rREPEAT |
18 |
public static final int |
rSET |
22 |
public static final int |
sAND |
26 |
public static final int |
SEPARATOR |
9 |
public static final int |
SEQUENCE |
46 |
public static final int |
sMINUS |
29 |
public static final int |
SP0 |
6 |
public static final int |
SP1 |
7 |
public static final int |
STAR |
36 |
public static final int |
TIMES |
39 |
public static final int |
TRACK |
45 |
public static final int |
WITHIN |
38 |
edu.upenn.gloDB.parser.SimpleCharStream | ||
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public static final boolean |
staticFlag |
false |
edu.upenn.gloDB.parser.TokenMgrError | ||
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static final int |
INVALID_LEXICAL_STATE |
2 |
static final int |
LEXICAL_ERROR |
0 |
static final int |
LOOP_DETECTED |
3 |
static final int |
STATIC_LEXER_ERROR |
1 |
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