|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use Feature | |
---|---|
edu.upenn.gloDB | |
edu.upenn.gloDB.parser |
Uses of Feature in edu.upenn.gloDB |
---|
Classes in edu.upenn.gloDB that implement Feature | |
---|---|
class |
AbstractFeature
AbstractFeature. |
class |
ExactFeature
These objects store exact positions bounding a Feature. |
class |
FuzzyFeature
These objects code Features that don't have definite boundaries. |
Methods in edu.upenn.gloDB that return Feature | |
---|---|
static Feature |
FeatureUtils.contained(Feature feature,
int minB,
int maxB)
Returns a new Feature containing the region in 'feature' that is bounded by minB/maxB. |
Feature |
FuzzyFeature.flip()
Inverts the positions, returning a new Feature object. |
Feature |
Feature.flip()
Inverts the positions, returning a new Feature object. |
Feature |
ExactFeature.flip()
Inverts the positions, returning a new Feature object. |
Feature |
FuzzyFeature.overlap(Feature feature)
Returns the overlapping region between the two Features. |
Feature |
Feature.overlap(Feature feature)
Returns the overlapping region between the two Features. |
Feature |
ExactFeature.overlap(Feature feature)
Returns the overlapping region between the two Features. |
static Feature |
FeatureUtils.overlap(Feature featureA,
Feature featureB)
Returns the overlapping region between the two Features. |
Methods in edu.upenn.gloDB with parameters of type Feature | |
---|---|
void |
Track.addFeature(Feature newFeature)
Adds a Feature to 'features'. |
static void |
ObjectHandles.addFeature(Feature feature)
Add a Feature to the featurePool. |
void |
Track.addFeature(Feature newFeature,
boolean rebuildPool)
Adds a Feature to 'features'. |
static int |
FeatureUtils.compareFeatures(Feature featureA,
Feature featureB)
Compares two Features for order. |
static Feature |
FeatureUtils.contained(Feature feature,
int minB,
int maxB)
Returns a new Feature containing the region in 'feature' that is bounded by minB/maxB. |
boolean |
Track.contains(Feature feature)
Returns 'true' if 'feature' exists in this Track. |
boolean |
Sequence.contains(Feature feature)
Returns 'true' if 'feature' is contained in this Sequence object. |
boolean |
FuzzyFeature.contains(Feature feature)
Returns 'true' if the Feature 'feature' is contained in this Feature. |
boolean |
Feature.contains(Feature feature)
Returns 'true' if the Feature 'feature' exists in this Feature. |
boolean |
ExactFeature.contains(Feature feature)
Returns 'true' if the Feature 'feature' exists within this Feature. |
static boolean |
FeatureUtils.contains(Feature featureA,
Feature featureB)
Returns 'true' if the second Feature ('featureB') is contained in the first Feature ('featureA'). |
static int |
FeatureUtils.contains(Feature feature,
int pos)
Returns '-1' if 'feature' exists after the integer 'pos', returns '0' if 'pos' is contained in 'feature', and '1' if 'pos' occurs after 'feature'. |
Feature |
FuzzyFeature.overlap(Feature feature)
Returns the overlapping region between the two Features. |
Feature |
Feature.overlap(Feature feature)
Returns the overlapping region between the two Features. |
Feature |
ExactFeature.overlap(Feature feature)
Returns the overlapping region between the two Features. |
static Feature |
FeatureUtils.overlap(Feature featureA,
Feature featureB)
Returns the overlapping region between the two Features. |
boolean |
Track.overlaps(Feature featureB)
Returns 'true' if the Feature 'featureB' overlaps at least one Feature in this Track. |
boolean |
FuzzyFeature.overlaps(Feature feature)
Returns 'true' if the feature 'featCk' has positions that overlap positions in this feature. |
boolean |
Feature.overlaps(Feature feature)
Returns 'true' if the Feature 'feature' has at least one position that overlaps positions in this Feature. |
boolean |
ExactFeature.overlaps(Feature feature)
Returns 'true' if the Feature 'feature' has a position that overlaps this Feature. |
static boolean |
FeatureUtils.overlaps(Feature featureA,
Feature featureB)
Returns 'true' if the Features have overlapping positions. |
static boolean |
FeatureUtils.overlaps(Feature featureA,
Track track)
Returns 'true' if the Feature and Track overlap. |
void |
Track.removeFeature(Feature newFeature)
Removes a Feature from 'features'. |
Uses of Feature in edu.upenn.gloDB.parser |
---|
Methods in edu.upenn.gloDB.parser that return Feature | |
---|---|
Feature |
Operation.firstFeature()
Restart the Tracks iterator and return the first Feature. |
Feature |
Operation.nextFeature()
Return the next Feature in iterator. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |