Penn Program in Single Cell Biology

RNA-seq data

RNA-seq datasets generated by national workshop participants are provided below for public use. The national workshop handbook, containing the curriculum and protocols followed, is also available for download.

2015 National Single Cell Transcriptomics Workshop

  • Sequencer:  Illumina HiSeq 2500
  • Sequencing Type:  RNAseq
  • Read length (nt):  100x100
  • Paired End?:  Yes
  •     
  • Aligner:  STAR
  • Genomes:  rn6 (rat) or mm10 (mouse)
  • Gene Counts:  HTSeq

Funding

Corporate Sponsors

Downloads