edu.upenn.crimson
Class Partition

java.lang.Object
  edu.upenn.crimson.Partition

public class Partition
extends java.lang.Object

Partition header info.

Version:

$Id: Partition.java,v 1.16 2007/05/16 18:55:58 fisher Exp $

Field Summary

private java.lang.String	id This is a unique name for the partition object.
private int	length Total length of the partition's sequence.
private java.lang.String	modelID Model specific to this partition object.
private java.lang.String	notes Notes specific to this partition object.
private java.lang.String	treeID This is the tree structure for this partition.

Constructor Summary

Partition(java.lang.String id, Tree tree)

Partition(java.lang.String id, Tree tree, Model model, int length, java.lang.String notes)

Method Summary

java.lang.String	getID()
int	getLength()
java.lang.String	getModelID() Returns the ID for the model underlying this partition.
java.lang.String	getNotes()
java.lang.String	getTreeID() Get the ID for the tree containing this partition.
void	setModelID(Model model) Sets the ID for the model underlying this partition.
void	setNotes(java.lang.String notes) Updates the notes field in the partition object and the PARTITIONS table.
java.lang.String	toString() Returns Partition information.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

id

private java.lang.String id

This is a unique name for the partition object.

treeID

private java.lang.String treeID

This is the tree structure for this partition.

modelID

private java.lang.String modelID

Model specific to this partition object.

notes

private java.lang.String notes

Notes specific to this partition object.

length

private int length

Total length of the partition's sequence. This shouldn't be changed after the partition is created.

Constructor Detail

Partition

public Partition(java.lang.String id,
                 Tree tree)

Partition

public Partition(java.lang.String id,
                 Tree tree,
                 Model model,
                 int length,
                 java.lang.String notes)
          throws InvalidIDException

Throws:

InvalidIDException

Method Detail

getID

public java.lang.String getID()

getTreeID

public java.lang.String getTreeID()

Get the ID for the tree containing this partition.

setModelID

public void setModelID(Model model)

Sets the ID for the model underlying this partition. We require a model object rather than an ID, to make sure that the model really exists.

getModelID

public java.lang.String getModelID()

Returns the ID for the model underlying this partition.

setNotes

public void setNotes(java.lang.String notes)

Updates the notes field in the partition object and the PARTITIONS table.

getNotes

public java.lang.String getNotes()

getLength

public int getLength()

toString

public java.lang.String toString()

Returns Partition information.

Overrides:

toString in class java.lang.Object