Serialized Form

Package edu.upenn.crimson

Class edu.upenn.crimson.CrimsonException extends java.lang.RuntimeException implements Serializable

Class edu.upenn.crimson.InvalidIDException extends CrimsonException implements Serializable

Class edu.upenn.crimson.ModelTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

models

java.util.ArrayList<E> models

Stores the Models that are in the table.

columnNames

java.lang.String[] columnNames

Class edu.upenn.crimson.QueryTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

queries

java.util.ArrayList<E> queries

Stores the Queries that are in the table.

columnNames

java.lang.String[] columnNames

Class edu.upenn.crimson.TreeTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

trees

java.util.ArrayList<E> trees

Stores the Trees that are in the table.

columnNames

java.lang.String[] columnNames

Package edu.upenn.crimson.gui

Class edu.upenn.crimson.gui.FieldEditDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

thisDialog

FieldEditDialog thisDialog

save

java.util.ArrayList<E> save

textFields

java.util.ArrayList<E> textFields

okB

javax.swing.JButton okB

cancelB

javax.swing.JButton cancelB

Class edu.upenn.crimson.gui.ModelEditor extends javax.swing.JFrame implements Serializable

Serialized Fields

thisFrame

ModelEditor thisFrame

model

Model model

notesTA

javax.swing.JTextArea notesTA

detailsTA

javax.swing.JTextArea detailsTA

Class edu.upenn.crimson.gui.ObjectSelectorDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

thisDialog

ObjectSelectorDialog thisDialog

output

java.util.ArrayList<E> output

objectL

javax.swing.JList objectL

selectB

javax.swing.JButton selectB

cancelB

javax.swing.JButton cancelB

Class edu.upenn.crimson.gui.QueryDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

thisDialog

QueryDialog thisDialog

query

Query query

fileNameTF

javax.swing.JTextField fileNameTF

fileBrowseB

javax.swing.JButton fileBrowseB

fileIntSeqCB

javax.swing.JCheckBox fileIntSeqCB

fileRepeatS

javax.swing.JSpinner fileRepeatS

runB

javax.swing.JButton runB

cancelB

javax.swing.JButton cancelB

Class edu.upenn.crimson.gui.QueryEditor extends javax.swing.JFrame implements Serializable

Serialized Fields

MAX_LEAVES

long MAX_LEAVES

This is the total number of leaves that will be displayed in the leaf list for the user to manually select.

MAX_SEED

long MAX_SEED

This is a determined by the random number generator used in randomselect.

LEAF_SELECTION

java.lang.String[] LEAF_SELECTION

SEQUENCE_SELECTION

java.lang.String[] SEQUENCE_SELECTION

thisFrame

QueryEditor thisFrame

query

Query query

tree

Tree tree

treeCB

javax.swing.JComboBox treeCB

treePartitionsL

javax.swing.JLabel treePartitionsL

treeLeavesL

javax.swing.JLabel treeLeavesL

treeMaxTempDepthL

javax.swing.JLabel treeMaxTempDepthL

treeTempDepthB

javax.swing.JButton treeTempDepthB

treeMaxLevelL

javax.swing.JLabel treeMaxLevelL

treeLevelB

javax.swing.JButton treeLevelB

treeLengthL

javax.swing.JLabel treeLengthL

leafCB

javax.swing.JComboBox leafCB

sequenceCB

javax.swing.JComboBox sequenceCB

numLeavesS

javax.swing.JSpinner numLeavesS

numLeavesSM

javax.swing.SpinnerNumberModel numLeavesSM

tempDepthS

javax.swing.JSpinner tempDepthS

tempDepthSM

javax.swing.SpinnerNumberModel tempDepthSM

levelS

javax.swing.JSpinner levelS

levelSM

javax.swing.SpinnerNumberModel levelSM

leafL

javax.swing.JList leafL

numPositionsS

javax.swing.JSpinner numPositionsS

numPositionsSM

javax.swing.SpinnerNumberModel numPositionsSM

maxPositions

int maxPositions

positionTF

javax.swing.JTextField positionTF

partitionsL

javax.swing.JList partitionsL

selectAllB

javax.swing.JButton selectAllB

unselectAllB

javax.swing.JButton unselectAllB

selectModelB

javax.swing.JButton selectModelB

unselectModelB

javax.swing.JButton unselectModelB

seedTF

javax.swing.JTextField seedTF

file

java.lang.String file

incSequence

boolean incSequence

repeat

int repeat

Class edu.upenn.crimson.gui.ViewHTML extends javax.swing.JFrame implements Serializable

Serialized Fields

thisFrame

ViewHTML thisFrame

htmlText

ViewHTML.HTMLEditorPane htmlText