Software Repository
Kim Laboratory
Computational Evolutionary Biology

latest news

VisCello; for visualization of single cell data.

Sample data provenance from 1,347 RNAseq samples.

ORNASEQ: Ontology for RNA sequencing.

Maintained by Paul Magewene

License (pdf)

Publication: P.M. Magwene, P. Lizardi, and J. Kim. 2003. "Reconstructing the temporal ordering of biological samples using microarray data." Bioinformatics., 19(7): 842-850.

Temporal Reconstruction Algorithm

http://sites.biology.duke.edu/magwenelab/updated-pathrecon.zip